Our Faculty

Scott Andre Oakes, MD

Scott Oakes’s laboratory studies how mammalian cells commit “suicide” in response to various forms of damage and what goes wrong with this process in cancer and other diseases. In particular, they focus on a type of stress that occurs when the cell’s protein folding factory—an organelle called the endoplasmic reticulum—is overwhelmed and protein quality control fails. He is actively engaged in developing drugs to control cell fate under these conditions, which have potential to benefit patients with diseases from cancer to neurodegeneration.

Dana-Farber Cancer Institute, Harvard Medical School
Boston, MA
Postdoctoral Scholar - Biochemistry & Cell Biology
2005

Brigham and Women's Hospital, Harvard Medical School
Boston, MA
Residency - Pathology
2000

University of Connecticut School of Medicine
Farmington, CT
M.D. - Medicine
1998

Howard Hughes Medical Institute, National Institutes of Health
Bethesda, M.D.
Research Scholar - Immunology
1996

Elmira College
Elmira, NY
B.A. - Biochemistry
1993

Direct inhibition of tumor hypoxia response with synthetic transcriptional repressors.
Direct inhibition of tumor hypoxia response with synthetic transcriptional repressors. Nat Chem Biol. 2024 Aug 30.
PMID: 39215099

Inhibition of the eukaryotic initiation factor-2a kinase PERK decreases risk of autoimmune diabetes in mice.
Inhibition of the eukaryotic initiation factor-2a kinase PERK decreases risk of autoimmune diabetes in mice. J Clin Invest. 2024 Jun 18; 134(16).
PMID: 38889047

Inhibition of the Eukaryotic Initiation Factor-2-a Kinase PERK Decreases Risk of Autoimmune Diabetes in Mice.
Inhibition of the Eukaryotic Initiation Factor-2-a Kinase PERK Decreases Risk of Autoimmune Diabetes in Mice. bioRxiv. 2024 Jun 03.
PMID: 38895427

Unfolding emergency calls stress granules to the ER.
Unfolding emergency calls stress granules to the ER. Nat Cell Biol. 2024 Jun; 26(6):845-846.
PMID: 38822214

Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition.
Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition. bioRxiv. 2024 May 26.
PMID: 37645713

The Integrated Stress Response in Pancreatic Development, Tissue Homeostasis, and Cancer.
The Integrated Stress Response in Pancreatic Development, Tissue Homeostasis, and Cancer. Gastroenterology. 2024 May 18.
PMID: 38768690

Stress and human health in diabetes: A report from the 19th Chicago Biomedical Consortium symposium.
Stress and human health in diabetes: A report from the 19th Chicago Biomedical Consortium symposium. J Clin Transl Sci. 2023; 7(1):e263.
PMID: 38229904

DISSECTING TUMOR TRANSCRIPTIONAL HETEROGENEITY FROM SINGLE-CELL RNA-SEQ DATA BY GENERALIZED BINARY COVARIANCE DECOMPOSITION.
DISSECTING TUMOR TRANSCRIPTIONAL HETEROGENEITY FROM SINGLE-CELL RNA-SEQ DATA BY GENERALIZED BINARY COVARIANCE DECOMPOSITION. bioRxiv. 2023 Aug 17.
PMID: 37645713

Erratum. Integrated Physiology of the Exocrine and Endocrine Compartments in Pancreatic Diseases: Workshop Proceedings. Diabetes 2023;72:433-448.
Erratum. Integrated Physiology of the Exocrine and Endocrine Compartments in Pancreatic Diseases: Workshop Proceedings. Diabetes 2023;72:433-448. Diabetes. 2023 Aug 01; 72(8):1173.
PMID: 37116182

Deletion of the Unfolded Protein Response Transducer IRE1a Is Detrimental to Aging Photoreceptors and to ER Stress-Mediated Retinal Degeneration.
Deletion of the Unfolded Protein Response Transducer IRE1a Is Detrimental to Aging Photoreceptors and to ER Stress-Mediated Retinal Degeneration. Invest Ophthalmol Vis Sci. 2023 04 03; 64(4):30.
PMID: 37097227

View All Publications

Investigator Award
Neuroendocrine Tumor Research Foundation (NETRF)
2023

Outstanding Investigator Award
American Society for Investigative Pathology (ASIP)
2019

Stein Innovation Award
Research to Prevent Blindness , Inc.
2018

Outstanding Mentor Award
University of California San Francisco
2017

Neuroendocrine Tumor Award
American Association for Cancer Research (AACR)
2015 - 2017

Scholar-Innovator Award
Harrington Discovery Institute
2013 - 2015

Elected Member
American Society for Clinical Investigation (ASCI)
2013

Research Scholar Award
American Cancer Society
2012 - 2015

Early Career Physician Scientist Award
Howard Hughes Medical Institute
2007 - 2011

Junior Investigator Award
American Cancer Society
2006 - 2007

Mentored Clinical Scientist Development Award (K08)
NIAMS, NIH
2003 - 2008

Research Scholar
Howard Hughes Medical Institute
1995 - 1996

Valedictorian
Elmira College
1993